Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC11.52□□□□□ -0.56
Usf1Q61069 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Usf1Q61069 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC11.52□□□□□ -0.57
Usf1Q61069 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Usf1Q61069 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm14058-201ENSMUST00000116082 735 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm13315-201ENSMUST00000120376 991 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm10051-201ENSMUST00000145209 414 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Gm8194-201ENSMUST00000159783 859 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Gm5616-201ENSMUST00000165252 384 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 Gm8741-201ENSMUST00000174736 384 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm5369-201ENSMUST00000217499 588 ntBASIC11.52□□□□□ -0.57
Usf1Q61069 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC11.52□□□□□ -0.57
Usf1Q61069 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Usf1Q61069 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Usf1Q61069 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Usf1Q61069 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC11.51□□□□□ -0.57
Usf1Q61069 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
Usf1Q61069 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Usf1Q61069 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
Usf1Q61069 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC11.51□□□□□ -0.57
Usf1Q61069 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.51□□□□□ -0.57
Usf1Q61069 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.51□□□□□ -0.57
Usf1Q61069 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC11.51□□□□□ -0.57
Usf1Q61069 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC11.51□□□□□ -0.57
Usf1Q61069 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.51□□□□□ -0.57
Usf1Q61069 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Usf1Q61069 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Usf1Q61069 Gm44999-201ENSMUST00000207456 1493 ntBASIC11.51□□□□□ -0.57
Usf1Q61069 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC11.5□□□□□ -0.57
Usf1Q61069 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Usf1Q61069 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms