Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Elf4-201ENSMUST00000033429 5847 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Trim63Q38HM4 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Tnfrsf9-205ENSMUST00000116257 2115 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Vwa5b2-202ENSMUST00000096197 4527 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Birc6-202ENSMUST00000180037 15768 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Gm13233-201ENSMUST00000118760 1443 ntBASIC10.37□□□□□ -0.75
Trim63Q38HM4 Gm13244-201ENSMUST00000118855 1446 ntBASIC10.37□□□□□ -0.75
Trim63Q38HM4 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Gm19931-201ENSMUST00000198920 368 ntBASIC10.37□□□□□ -0.75
Trim63Q38HM4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Celsr2-201ENSMUST00000090558 10598 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Nrap-202ENSMUST00000073536 5501 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Fyco1-202ENSMUST00000167595 7692 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Trp73-205ENSMUST00000133533 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Plekha7-201ENSMUST00000084664 4312 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Trim63Q38HM4 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Fam198b-202ENSMUST00000118853 6729 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gm38359-201ENSMUST00000191884 2225 ntBASIC10.36□□□□□ -0.75
Trim63Q38HM4 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 H2-M9-202ENSMUST00000087167 1070 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC10.36□□□□□ -0.75
Trim63Q38HM4 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gm19040-201ENSMUST00000203280 4726 ntBASIC10.36□□□□□ -0.75
Trim63Q38HM4 Ralgps1-205ENSMUST00000131298 6035 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gm6092-201ENSMUST00000121659 2029 ntBASIC10.36□□□□□ -0.75
Trim63Q38HM4 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Trim63Q38HM4 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Trim63Q38HM4 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms