Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm25063-201ENSMUST00000104666 94 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Cbx3-ps3-201ENSMUST00000118595 550 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm6447-201ENSMUST00000118905 835 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm13792-201ENSMUST00000121350 423 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 4931428L18Rik-201ENSMUST00000127775 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm22146-201ENSMUST00000157397 288 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm25881-201ENSMUST00000157783 103 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm5733-201ENSMUST00000190232 939 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm28926-201ENSMUST00000191063 680 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm29808-201ENSMUST00000194419 468 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 1700016F12Rik-201ENSMUST00000198159 655 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm42556-201ENSMUST00000201397 607 ntTSL 3 BASIC12.61□□□□□ -0.39
Col9a1Q05722 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 4930458B22Rik-201ENSMUST00000209339 754 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm6653-201ENSMUST00000218063 1288 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm18026-201ENSMUST00000222789 727 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 AC121567.1-201ENSMUST00000227213 842 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm22058-201ENSMUST00000083393 310 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Col9a1Q05722 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC12.61□□□□□ -0.39
Col9a1Q05722 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm9361-201ENSMUST00000198695 1507 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Col9a1Q05722 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Col9a1Q05722 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Gm37891-201ENSMUST00000195585 1326 ntBASIC12.61□□□□□ -0.39
Col9a1Q05722 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col9a1Q05722 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm8228-201ENSMUST00000189949 2192 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm37859-201ENSMUST00000195529 2173 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Kcne2-202ENSMUST00000113971 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm14957-201ENSMUST00000121069 817 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Cox7c-203ENSMUST00000131011 540 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm5616-201ENSMUST00000165252 384 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm6918-201ENSMUST00000167622 1222 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm8741-201ENSMUST00000174736 384 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 A930036I15Rik-201ENSMUST00000196018 1045 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC12.6□□□□□ -0.39
Col9a1Q05722 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 2010109A12Rik-201ENSMUST00000031330 549 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm6304-201ENSMUST00000096579 447 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm43149-201ENSMUST00000198162 1422 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Gm9575-201ENSMUST00000122140 1339 ntBASIC12.6□□□□□ -0.39
Col9a1Q05722 Olfr1288-202ENSMUST00000214816 1326 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col9a1Q05722 4930518I15Rik-201ENSMUST00000099141 1331 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Col9a1Q05722 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col9a1Q05722 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 104.9 ms