Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Gm5525-201ENSMUST00000190438 1312 ntBASIC13.07□□□□□ -0.32
Sox9Q04887 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Sox9Q04887 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC13.07□□□□□ -0.32
Sox9Q04887 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Sox9Q04887 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Sox9Q04887 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Sox9Q04887 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Sox9Q04887 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Gm12628-201ENSMUST00000122193 382 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC13.06□□□□□ -0.32
Sox9Q04887 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Mir7686-201ENSMUST00000200604 57 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Gm4482-201ENSMUST00000200876 742 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 AC153937.1-201ENSMUST00000218734 412 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Il17rd-203ENSMUST00000225146 3366 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.06□□□□□ -0.32
Sox9Q04887 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Sox9Q04887 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.06□□□□□ -0.32
Sox9Q04887 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.06□□□□□ -0.32
Sox9Q04887 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Sox9Q04887 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 AC169511.2-201ENSMUST00000226674 2063 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC13.05□□□□□ -0.32
Sox9Q04887 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Gm15573-201ENSMUST00000119487 540 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Gm22138-201ENSMUST00000158748 128 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Mir6998-201ENSMUST00000183343 64 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.05□□□□□ -0.32
Sox9Q04887 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 AC153505.1-201ENSMUST00000218819 1071 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Sox9Q04887 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Gm4782-201ENSMUST00000168705 2046 ntBASIC13.05□□□□□ -0.32
Sox9Q04887 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Sox9Q04887 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Sox9Q04887 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Sox9Q04887 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms