Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm10110-202ENSMUST00000228705 3220 ntBASIC10.34□□□□□ -0.75
Sdc1P18828 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm37015-201ENSMUST00000192763 1521 ntBASIC10.34□□□□□ -0.75
Sdc1P18828 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC10.34□□□□□ -0.75
Sdc1P18828 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC10.34□□□□□ -0.75
Sdc1P18828 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm28033-201ENSMUST00000184224 96 ntBASIC10.34□□□□□ -0.75
Sdc1P18828 Mir7071-201ENSMUST00000184847 69 ntBASIC10.34□□□□□ -0.75
Sdc1P18828 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC10.34□□□□□ -0.75
Sdc1P18828 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Gm18262-201ENSMUST00000222560 1946 ntBASIC10.34□□□□□ -0.75
Sdc1P18828 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC10.34□□□□□ -0.75
Sdc1P18828 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC10.34□□□□□ -0.75
Sdc1P18828 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
Sdc1P18828 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC10.34□□□□□ -0.75
Sdc1P18828 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Gm43622-201ENSMUST00000200140 2019 ntBASIC10.33□□□□□ -0.76
Sdc1P18828 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
Sdc1P18828 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Gm15393-201ENSMUST00000120499 219 ntBASIC10.33□□□□□ -0.76
Sdc1P18828 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Mir5131-201ENSMUST00000175426 93 ntBASIC10.33□□□□□ -0.76
Sdc1P18828 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
Sdc1P18828 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
Sdc1P18828 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Gm10040-201ENSMUST00000080726 1662 ntBASIC10.33□□□□□ -0.76
Sdc1P18828 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
Sdc1P18828 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Sdc1P18828 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Sdc1P18828 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms