Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Gm12138-201ENSMUST00000122180 951 ntBASIC13.68□□□□□ -0.22
RaraP11416 Gm2231-201ENSMUST00000125661 612 ntBASIC13.68□□□□□ -0.22
RaraP11416 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Gm6244-201ENSMUST00000178732 841 ntBASIC13.68□□□□□ -0.22
RaraP11416 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Gm8652-201ENSMUST00000181363 964 ntBASIC13.68□□□□□ -0.22
RaraP11416 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC13.68□□□□□ -0.22
RaraP11416 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.68□□□□□ -0.22
RaraP11416 AC154239.3-201ENSMUST00000226933 674 ntBASIC13.68□□□□□ -0.22
RaraP11416 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RaraP11416 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RaraP11416 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Gm18227-201ENSMUST00000211082 1468 ntBASIC13.67□□□□□ -0.22
RaraP11416 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC13.67□□□□□ -0.22
RaraP11416 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.67□□□□□ -0.22
RaraP11416 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC13.67□□□□□ -0.22
RaraP11416 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
RaraP11416 Gm6652-201ENSMUST00000186414 1070 ntBASIC13.67□□□□□ -0.22
RaraP11416 Gm6745-201ENSMUST00000199216 526 ntBASIC13.67□□□□□ -0.22
RaraP11416 Gm32025-201ENSMUST00000217960 307 ntBASIC13.67□□□□□ -0.22
RaraP11416 AC110817.1-201ENSMUST00000225706 605 ntBASIC13.67□□□□□ -0.22
RaraP11416 Gm2824-203ENSMUST00000226189 1228 ntBASIC13.67□□□□□ -0.22
RaraP11416 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Gm19817-201ENSMUST00000199764 2132 ntBASIC13.67□□□□□ -0.22
RaraP11416 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
RaraP11416 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RaraP11416 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Gm1995-201ENSMUST00000220838 2602 ntBASIC13.66□□□□□ -0.22
RaraP11416 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.66□□□□□ -0.22
RaraP11416 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Gm24196-201ENSMUST00000179161 110 ntBASIC13.66□□□□□ -0.22
RaraP11416 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.66□□□□□ -0.22
RaraP11416 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.66□□□□□ -0.22
RaraP11416 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
RaraP11416 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Gm37105-201ENSMUST00000192251 2085 ntBASIC13.66□□□□□ -0.22
RaraP11416 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
RaraP11416 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.66□□□□□ -0.22
RaraP11416 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RaraP11416 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.65□□□□□ -0.22
RaraP11416 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC13.65□□□□□ -0.22
RaraP11416 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms