Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Rangap1-201ENSMUST00000052374 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Aco2-201ENSMUST00000023116 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm43112-201ENSMUST00000196665 3122 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm8320-201ENSMUST00000177584 1762 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm8303-201ENSMUST00000178371 1762 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm8331-201ENSMUST00000178433 1762 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm17271-201ENSMUST00000165535 355 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm44719-201ENSMUST00000206404 149 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm5364-201ENSMUST00000216789 889 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Gm17230-201ENSMUST00000171194 3942 ntBASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trem1Q9JKE2 Olfr463-202ENSMUST00000215150 2031 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm44831-201ENSMUST00000208469 2989 ntBASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm12260-201ENSMUST00000122447 411 ntBASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm8116-201ENSMUST00000182917 1201 ntBASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm7063-201ENSMUST00000186840 981 ntBASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Tmed9-203ENSMUST00000224741 1450 ntBASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trem1Q9JKE2 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms