Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ushbp1Q8R370 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm15370-201ENSMUST00000117158 253 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm14704-201ENSMUST00000120300 874 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm2991-201ENSMUST00000173338 480 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm27320-201ENSMUST00000184892 109 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ushbp1Q8R370 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm13786-201ENSMUST00000122371 333 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm22121-201ENSMUST00000175148 54 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm37042-201ENSMUST00000193816 581 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm18753-201ENSMUST00000201000 566 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm44772-201ENSMUST00000207623 1191 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Gm8227-201ENSMUST00000223306 571 ntBASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ushbp1Q8R370 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ushbp1Q8R370 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ushbp1Q8R370 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 208.6 ms