Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm6912-201ENSMUST00000117218 544 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm3436-201ENSMUST00000179930 840 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 AC132104.2-201ENSMUST00000215011 266 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 AC154767.3-201ENSMUST00000225150 1342 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Rnf220Q6PDX6 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Gm27430-201ENSMUST00000184585 107 ntBASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Gm44333-201ENSMUST00000197168 107 ntBASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Rnf220Q6PDX6 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm14767-201ENSMUST00000121559 586 ntBASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm27702-201ENSMUST00000184512 56 ntBASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.01□□□□□ -0.49
Rnf220Q6PDX6 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms