Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
Trim27Q62158 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trim27Q62158 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC15.54■□□□□ 0.08
Trim27Q62158 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.54■□□□□ 0.08
Trim27Q62158 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC15.54■□□□□ 0.08
Trim27Q62158 Gm5850-201ENSMUST00000192923 1206 ntBASIC15.54■□□□□ 0.08
Trim27Q62158 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC15.54■□□□□ 0.08
Trim27Q62158 Gm17823-201ENSMUST00000217830 1006 ntBASIC15.54■□□□□ 0.08
Trim27Q62158 Gm5781-201ENSMUST00000219792 443 ntBASIC15.54■□□□□ 0.08
Trim27Q62158 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim27Q62158 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim27Q62158 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.53■□□□□ 0.08
Trim27Q62158 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Gm5187-201ENSMUST00000117317 991 ntBASIC15.53■□□□□ 0.08
Trim27Q62158 Gm13736-201ENSMUST00000119272 253 ntBASIC15.53■□□□□ 0.08
Trim27Q62158 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 Gm9022-201ENSMUST00000182482 992 ntBASIC15.53■□□□□ 0.08
Trim27Q62158 Gm38158-201ENSMUST00000194617 339 ntBASIC15.53■□□□□ 0.08
Trim27Q62158 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Gm25857-201ENSMUST00000082788 129 ntBASIC15.53■□□□□ 0.08
Trim27Q62158 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Trim27Q62158 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trim27Q62158 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim27Q62158 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Trim27Q62158 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Trim27Q62158 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Gm4735-201ENSMUST00000138679 1302 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Gm5855-201ENSMUST00000200240 1305 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Gm13316-201ENSMUST00000140537 691 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC15.52■□□□□ 0.08
Trim27Q62158 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Trim27Q62158 Gm27243-201ENSMUST00000183964 521 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Mir7085-201ENSMUST00000184353 66 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Trim27Q62158 Gm37008-201ENSMUST00000195712 319 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC15.52■□□□□ 0.08
Trim27Q62158 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 AC154462.2-201ENSMUST00000227519 370 ntBASIC15.52■□□□□ 0.08
Trim27Q62158 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Trim27Q62158 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim27Q62158 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim27Q62158 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC15.52■□□□□ 0.07
Trim27Q62158 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim27Q62158 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim27Q62158 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trim27Q62158 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim27Q62158 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim27Q62158 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trim27Q62158 Gm42480-201ENSMUST00000198434 2595 ntBASIC15.51■□□□□ 0.07
Trim27Q62158 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms