Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.19□□□□□ -0.46
ClpbQ60649 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
ClpbQ60649 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
ClpbQ60649 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.18□□□□□ -0.46
ClpbQ60649 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
ClpbQ60649 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.18□□□□□ -0.46
ClpbQ60649 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC12.18□□□□□ -0.46
ClpbQ60649 Gm7029-201ENSMUST00000173226 450 ntBASIC12.18□□□□□ -0.46
ClpbQ60649 Gm42693-201ENSMUST00000196779 631 ntBASIC12.18□□□□□ -0.46
ClpbQ60649 Gm6007-201ENSMUST00000208170 823 ntBASIC12.18□□□□□ -0.46
ClpbQ60649 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.18□□□□□ -0.46
ClpbQ60649 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.18□□□□□ -0.46
ClpbQ60649 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
ClpbQ60649 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
ClpbQ60649 AC101945.2-201ENSMUST00000227886 1377 ntBASIC12.18□□□□□ -0.46
ClpbQ60649 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
ClpbQ60649 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
ClpbQ60649 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC12.17□□□□□ -0.46
ClpbQ60649 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.17□□□□□ -0.46
ClpbQ60649 Gm19184-201ENSMUST00000196798 928 ntBASIC12.17□□□□□ -0.46
ClpbQ60649 Tyms-ps-201ENSMUST00000219550 915 ntBASIC12.17□□□□□ -0.46
ClpbQ60649 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC12.17□□□□□ -0.46
ClpbQ60649 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
ClpbQ60649 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.17□□□□□ -0.46
ClpbQ60649 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
ClpbQ60649 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
ClpbQ60649 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
ClpbQ60649 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.16□□□□□ -0.46
ClpbQ60649 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
ClpbQ60649 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms