Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm29608-201ENSMUST00000190444 463 ntBASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 AC238811.1-201ENSMUST00000225302 441 ntBASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 AC160410.1-201ENSMUST00000219298 1972 ntBASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trim40Q3UWA4 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Gm13223-201ENSMUST00000118609 747 ntBASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Gm12485-201ENSMUST00000119641 291 ntBASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trim40Q3UWA4 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Gm44831-201ENSMUST00000208469 2989 ntBASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim40Q3UWA4 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim40Q3UWA4 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms