Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.93□□□□□ -0.02
Limch1Q3UH68 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Gm25261-201ENSMUST00000157416 134 ntBASIC14.93□□□□□ -0.02
Limch1Q3UH68 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC14.93□□□□□ -0.02
Limch1Q3UH68 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.93□□□□□ -0.02
Limch1Q3UH68 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Mir339-201ENSMUST00000083659 96 ntBASIC14.93□□□□□ -0.02
Limch1Q3UH68 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Limch1Q3UH68 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm16479-201ENSMUST00000121706 932 ntBASIC14.92□□□□□ -0.02
Limch1Q3UH68 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm43758-201ENSMUST00000199500 367 ntBASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm43416-201ENSMUST00000201916 1015 ntBASIC14.92□□□□□ -0.02
Limch1Q3UH68 Olfr284-202ENSMUST00000206647 966 ntBASIC14.92□□□□□ -0.02
Limch1Q3UH68 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC14.92□□□□□ -0.02
Limch1Q3UH68 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.92□□□□□ -0.02
Limch1Q3UH68 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Limch1Q3UH68 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 Gm4857-201ENSMUST00000192718 785 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Gm9368-201ENSMUST00000219348 831 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.91□□□□□ -0.02
Limch1Q3UH68 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Limch1Q3UH68 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Limch1Q3UH68 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms