Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Gm18307-201ENSMUST00000206864 949 ntBASIC12.34□□□□□ -0.43
Col28a1Q2UY11 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.34□□□□□ -0.43
Col28a1Q2UY11 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Col28a1Q2UY11 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Col28a1Q2UY11 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.33□□□□□ -0.43
Col28a1Q2UY11 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Col28a1Q2UY11 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Col28a1Q2UY11 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Col28a1Q2UY11 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm12957-201ENSMUST00000117835 377 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm12390-201ENSMUST00000117897 397 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm27839-201ENSMUST00000184242 106 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm29608-201ENSMUST00000190444 463 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm43721-201ENSMUST00000199677 2313 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Col28a1Q2UY11 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Col28a1Q2UY11 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 89 ms