Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.4□□□□□ -0.26
Shmt1P50431 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.4□□□□□ -0.26
Shmt1P50431 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.4□□□□□ -0.26
Shmt1P50431 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.4□□□□□ -0.26
Shmt1P50431 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
Shmt1P50431 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm45925-201ENSMUST00000218882 744 ntBASIC13.4□□□□□ -0.26
Shmt1P50431 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.4□□□□□ -0.26
Shmt1P50431 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Shmt1P50431 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Shmt1P50431 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Shmt1P50431 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Shmt1P50431 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.39□□□□□ -0.27
Shmt1P50431 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Shmt1P50431 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Gm11597-201ENSMUST00000121423 964 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13.39□□□□□ -0.27
Shmt1P50431 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Shmt1P50431 Gm18056-201ENSMUST00000207670 568 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm18061-201ENSMUST00000208350 562 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm18063-201ENSMUST00000208529 568 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm18052-201ENSMUST00000208750 559 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Gm9004-201ENSMUST00000218739 1222 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.39□□□□□ -0.27
Shmt1P50431 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Shmt1P50431 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Shmt1P50431 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Shmt1P50431 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Shmt1P50431 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Shmt1P50431 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Gm22323-201ENSMUST00000103832 109 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Shmt1P50431 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Gm12058-201ENSMUST00000118614 437 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 Gm13315-201ENSMUST00000120376 991 ntBASIC13.38□□□□□ -0.27
Shmt1P50431 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Shmt1P50431 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms