Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Traf1P39428 Gm19221-201ENSMUST00000221827 1477 ntBASIC14.69□□□□□ -0.06
Traf1P39428 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Traf1P39428 Gm10728-201ENSMUST00000194292 1829 ntBASIC14.69□□□□□ -0.06
Traf1P39428 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.68□□□□□ -0.06
Traf1P39428 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Gm37827-201ENSMUST00000194486 1542 ntBASIC14.68□□□□□ -0.06
Traf1P39428 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.68□□□□□ -0.06
Traf1P39428 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
Traf1P39428 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Gm44405-201ENSMUST00000198952 126 ntBASIC14.68□□□□□ -0.06
Traf1P39428 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC14.68□□□□□ -0.06
Traf1P39428 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Traf1P39428 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.68□□□□□ -0.06
Traf1P39428 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
Traf1P39428 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Traf1P39428 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Traf1P39428 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Traf1P39428 Gm3287-205ENSMUST00000228893 1332 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
Traf1P39428 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Gm44094-201ENSMUST00000204703 2030 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Gm15808-201ENSMUST00000119046 604 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC14.67□□□□□ -0.06
Traf1P39428 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC14.67□□□□□ -0.06
Traf1P39428 Gm6082-201ENSMUST00000215204 454 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Gm9176-201ENSMUST00000219955 1120 ntBASIC14.67□□□□□ -0.06
Traf1P39428 AC093022.1-201ENSMUST00000226949 1072 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 AC154747.3-201ENSMUST00000224471 3470 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.67□□□□□ -0.06
Traf1P39428 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Traf1P39428 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Traf1P39428 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Traf1P39428 AC167669.2-201ENSMUST00000224417 1620 ntBASIC14.66□□□□□ -0.06
Traf1P39428 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
Traf1P39428 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Traf1P39428 Gm13813-201ENSMUST00000120998 787 ntBASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms