Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Zkscan14-203ENSMUST00000198959 2243 ntBASIC10.29□□□□□ -0.76
Cdx1P18111 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
Cdx1P18111 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 BC001981-202ENSMUST00000191393 1545 ntBASIC10.28□□□□□ -0.76
Cdx1P18111 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Gm15393-201ENSMUST00000120499 219 ntBASIC10.28□□□□□ -0.76
Cdx1P18111 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC10.28□□□□□ -0.76
Cdx1P18111 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC10.28□□□□□ -0.76
Cdx1P18111 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Gm31326-201ENSMUST00000191856 1048 ntBASIC10.28□□□□□ -0.76
Cdx1P18111 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Gm9908-201ENSMUST00000211534 448 ntBASIC10.28□□□□□ -0.76
Cdx1P18111 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC10.28□□□□□ -0.76
Cdx1P18111 AC130829.1-201ENSMUST00000221548 494 ntBASIC10.28□□□□□ -0.76
Cdx1P18111 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Cdx1P18111 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
Cdx1P18111 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC10.28□□□□□ -0.76
Cdx1P18111 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC10.28□□□□□ -0.76
Cdx1P18111 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Cdx1P18111 Gm8617-201ENSMUST00000118796 2222 ntBASIC10.27□□□□□ -0.76
Cdx1P18111 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx1P18111 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx1P18111 Gm2128-201ENSMUST00000108009 2560 ntBASIC10.27□□□□□ -0.76
Cdx1P18111 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC10.27□□□□□ -0.76
Cdx1P18111 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx1P18111 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx1P18111 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Cdx1P18111 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC10.27□□□□□ -0.77
Cdx1P18111 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Gm9109-201ENSMUST00000120254 1405 ntBASIC10.27□□□□□ -0.77
Cdx1P18111 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Cdx1P18111 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC10.27□□□□□ -0.77
Cdx1P18111 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC10.27□□□□□ -0.77
Cdx1P18111 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
Cdx1P18111 Gm33320-201ENSMUST00000192232 530 ntBASIC10.27□□□□□ -0.77
Cdx1P18111 Gm10766-202ENSMUST00000194123 606 ntBASIC10.27□□□□□ -0.77
Cdx1P18111 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Cdx1P18111 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Cdx1P18111 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
Cdx1P18111 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
Cdx1P18111 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Cdx1P18111 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Cdx1P18111 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
Cdx1P18111 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx1P18111 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx1P18111 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx1P18111 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Cdx1P18111 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC10.26□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms