Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.1□□□□□ -0.47
Lire1P11260 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Gm13392-201ENSMUST00000117708 150 ntBASIC12.1□□□□□ -0.47
Lire1P11260 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Gm2445-201ENSMUST00000182798 989 ntBASIC12.1□□□□□ -0.47
Lire1P11260 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Lire1P11260 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Gm13615-201ENSMUST00000120242 1612 ntBASIC12.1□□□□□ -0.47
Lire1P11260 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.1□□□□□ -0.47
Lire1P11260 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Lire1P11260 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
Lire1P11260 Dyrk1a-203ENSMUST00000122284 2356 ntTSL 5 BASIC12.1□□□□□ -0.47
Lire1P11260 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.09□□□□□ -0.47
Lire1P11260 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Lire1P11260 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Gm27731-201ENSMUST00000185192 107 ntBASIC12.09□□□□□ -0.47
Lire1P11260 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Gm42693-201ENSMUST00000196779 631 ntBASIC12.09□□□□□ -0.47
Lire1P11260 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC12.09□□□□□ -0.47
Lire1P11260 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.09□□□□□ -0.47
Lire1P11260 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.09□□□□□ -0.47
Lire1P11260 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Lire1P11260 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 AC122881.1-201ENSMUST00000225757 2695 ntBASIC12.09□□□□□ -0.47
Lire1P11260 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Lire1P11260 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Vmn1r38-202ENSMUST00000227493 3486 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Lire1P11260 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Lire1P11260 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
Lire1P11260 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Lire1P11260 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Lire1P11260 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Lire1P11260 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.08□□□□□ -0.47
Lire1P11260 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.08□□□□□ -0.48
Lire1P11260 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Lire1P11260 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.08□□□□□ -0.48
Lire1P11260 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Lire1P11260 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Lire1P11260 Gm13385-201ENSMUST00000121089 220 ntBASIC12.08□□□□□ -0.48
Lire1P11260 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
Lire1P11260 Gm29127-201ENSMUST00000188304 517 ntBASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms