Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Col3a1P08121 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
Col3a1P08121 Gm9555-201ENSMUST00000200908 583 ntBASIC14.97□□□□□ -0.01
Col3a1P08121 Gm10109-202ENSMUST00000206890 1211 ntBASIC14.97□□□□□ -0.01
Col3a1P08121 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC14.97□□□□□ -0.01
Col3a1P08121 Gm270-201ENSMUST00000223010 976 ntBASIC14.97□□□□□ -0.01
Col3a1P08121 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.97□□□□□ -0.01
Col3a1P08121 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.97□□□□□ -0.01
Col3a1P08121 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Col3a1P08121 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col3a1P08121 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Col3a1P08121 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC14.96□□□□□ -0.01
Col3a1P08121 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
Col3a1P08121 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC14.96□□□□□ -0.01
Col3a1P08121 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC14.96□□□□□ -0.01
Col3a1P08121 Gm15711-201ENSMUST00000118889 535 ntBASIC14.96□□□□□ -0.01
Col3a1P08121 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC14.96□□□□□ -0.01
Col3a1P08121 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC14.96□□□□□ -0.01
Col3a1P08121 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC14.96□□□□□ -0.01
Col3a1P08121 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.96□□□□□ -0.01
Col3a1P08121 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col3a1P08121 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col3a1P08121 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC14.96□□□□□ -0.02
Col3a1P08121 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Col3a1P08121 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col3a1P08121 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col3a1P08121 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
Col3a1P08121 Gm22133-201ENSMUST00000102082 109 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm6335-201ENSMUST00000118081 1194 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Gm7816-201ENSMUST00000119884 1194 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Gm15542-201ENSMUST00000121585 1194 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC14.95□□□□□ -0.02
Col3a1P08121 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm13045-201ENSMUST00000119019 712 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC14.95□□□□□ -0.02
Col3a1P08121 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm18038-201ENSMUST00000197900 485 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC14.95□□□□□ -0.02
Col3a1P08121 Gm18393-201ENSMUST00000208349 1131 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 Gm17827-201ENSMUST00000211825 742 ntBASIC14.95□□□□□ -0.02
Col3a1P08121 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Col3a1P08121 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Col3a1P08121 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col3a1P08121 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms