Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
Scn5aQ9JJV9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Scn5aQ9JJV9 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Scn5aQ9JJV9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.14■■□□□ 1.13
Scn5aQ9JJV9 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Scn5aQ9JJV9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Scn5aQ9JJV9 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC22.13■■□□□ 1.13
Scn5aQ9JJV9 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn5aQ9JJV9 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Scn5aQ9JJV9 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC22.1■■□□□ 1.13
Scn5aQ9JJV9 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC22.1■■□□□ 1.13
Scn5aQ9JJV9 Gm18284-201ENSMUST00000172604 624 ntBASIC22.1■■□□□ 1.13
Scn5aQ9JJV9 Gm6139-201ENSMUST00000079261 882 ntBASIC22.1■■□□□ 1.13
Scn5aQ9JJV9 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn5aQ9JJV9 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Scn5aQ9JJV9 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC22.09■■□□□ 1.13
Scn5aQ9JJV9 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Scn5aQ9JJV9 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn5aQ9JJV9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Scn5aQ9JJV9 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Scn5aQ9JJV9 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
Scn5aQ9JJV9 Gm43017-201ENSMUST00000198296 752 ntBASIC22.08■■□□□ 1.13
Scn5aQ9JJV9 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
Scn5aQ9JJV9 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 Gm5297-201ENSMUST00000198555 1171 ntBASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Scn5aQ9JJV9 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn5aQ9JJV9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn5aQ9JJV9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn5aQ9JJV9 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn5aQ9JJV9 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Scn5aQ9JJV9 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn5aQ9JJV9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn5aQ9JJV9 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC22.05■■□□□ 1.12
Scn5aQ9JJV9 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
Scn5aQ9JJV9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn5aQ9JJV9 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn5aQ9JJV9 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC22.04■■□□□ 1.12
Scn5aQ9JJV9 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn5aQ9JJV9 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
Scn5aQ9JJV9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn5aQ9JJV9 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn5aQ9JJV9 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn5aQ9JJV9 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC22.03■■□□□ 1.12
Scn5aQ9JJV9 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn5aQ9JJV9 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.12
Scn5aQ9JJV9 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Scn5aQ9JJV9 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Scn5aQ9JJV9 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC22.02■■□□□ 1.12
Scn5aQ9JJV9 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn5aQ9JJV9 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Scn5aQ9JJV9 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn5aQ9JJV9 AC115037.1-201ENSMUST00000223391 2173 ntBASIC22.01■■□□□ 1.11
Scn5aQ9JJV9 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn5aQ9JJV9 Gm12251-201ENSMUST00000117893 792 ntBASIC22.01■■□□□ 1.11
Scn5aQ9JJV9 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Scn5aQ9JJV9 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn5aQ9JJV9 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Scn5aQ9JJV9 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC21.99■■□□□ 1.11
Scn5aQ9JJV9 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.99■■□□□ 1.11
Scn5aQ9JJV9 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Scn5aQ9JJV9 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
Scn5aQ9JJV9 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 14 ms