Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Hmgb4Q6P8W9 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Hmgb4Q6P8W9 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.99■■□□□ 1.11
Hmgb4Q6P8W9 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Hmgb4Q6P8W9 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Hmgb4Q6P8W9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Hmgb4Q6P8W9 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Hmgb4Q6P8W9 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Hmgb4Q6P8W9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Hmgb4Q6P8W9 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Hmgb4Q6P8W9 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Hmgb4Q6P8W9 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Hmgb4Q6P8W9 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
Hmgb4Q6P8W9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Hmgb4Q6P8W9 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Hmgb4Q6P8W9 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Hmgb4Q6P8W9 Gm10399-202ENSMUST00000202768 748 ntBASIC21.93■■□□□ 1.1
Hmgb4Q6P8W9 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Gm43034-201ENSMUST00000198678 1364 ntBASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Gm13241-201ENSMUST00000094493 780 ntBASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Hmgb4Q6P8W9 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Hmgb4Q6P8W9 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Hmgb4Q6P8W9 Gm9847-201ENSMUST00000052528 599 ntBASIC21.91■■□□□ 1.1
Hmgb4Q6P8W9 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Hmgb4Q6P8W9 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC21.9■■□□□ 1.1
Hmgb4Q6P8W9 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Hmgb4Q6P8W9 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Hmgb4Q6P8W9 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Hmgb4Q6P8W9 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Hmgb4Q6P8W9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Hmgb4Q6P8W9 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Hmgb4Q6P8W9 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Hmgb4Q6P8W9 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Hmgb4Q6P8W9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Hmgb4Q6P8W9 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Hmgb4Q6P8W9 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Hmgb4Q6P8W9 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Hmgb4Q6P8W9 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Hmgb4Q6P8W9 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Hmgb4Q6P8W9 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC21.86■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms