Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Mir7071-201ENSMUST00000184847 69 ntBASIC18.15■□□□□ 0.5
Col7a1Q63870 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col7a1Q63870 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col7a1Q63870 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC18.14■□□□□ 0.49
Col7a1Q63870 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col7a1Q63870 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC18.14■□□□□ 0.49
Col7a1Q63870 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col7a1Q63870 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.14■□□□□ 0.49
Col7a1Q63870 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col7a1Q63870 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Col7a1Q63870 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col7a1Q63870 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.13■□□□□ 0.49
Col7a1Q63870 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.12■□□□□ 0.49
Col7a1Q63870 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 Gm27801-201ENSMUST00000184174 223 ntBASIC18.12■□□□□ 0.49
Col7a1Q63870 Gm43060-201ENSMUST00000200621 289 ntBASIC18.12■□□□□ 0.49
Col7a1Q63870 Gm10602-201ENSMUST00000098239 609 ntBASIC18.12■□□□□ 0.49
Col7a1Q63870 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col7a1Q63870 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col7a1Q63870 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.11■□□□□ 0.49
Col7a1Q63870 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.11■□□□□ 0.49
Col7a1Q63870 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.11■□□□□ 0.49
Col7a1Q63870 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col7a1Q63870 Gm10653-202ENSMUST00000139570 835 ntBASIC18.11■□□□□ 0.49
Col7a1Q63870 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.11■□□□□ 0.49
Col7a1Q63870 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col7a1Q63870 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col7a1Q63870 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col7a1Q63870 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col7a1Q63870 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.1■□□□□ 0.49
Col7a1Q63870 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Col7a1Q63870 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.1■□□□□ 0.49
Col7a1Q63870 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col7a1Q63870 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.1■□□□□ 0.49
Col7a1Q63870 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col7a1Q63870 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col7a1Q63870 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Col7a1Q63870 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.09■□□□□ 0.49
Col7a1Q63870 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Col7a1Q63870 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.09■□□□□ 0.49
Col7a1Q63870 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.09■□□□□ 0.49
Col7a1Q63870 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col7a1Q63870 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col7a1Q63870 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.09■□□□□ 0.49
Col7a1Q63870 AV356131-201ENSMUST00000206201 750 ntBASIC18.09■□□□□ 0.49
Col7a1Q63870 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.09■□□□□ 0.49
Col7a1Q63870 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
Col7a1Q63870 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col7a1Q63870 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.08■□□□□ 0.49
Col7a1Q63870 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Col7a1Q63870 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.08■□□□□ 0.49
Col7a1Q63870 AC117245.4-201ENSMUST00000217388 1646 ntBASIC18.08■□□□□ 0.48
Col7a1Q63870 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col7a1Q63870 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC18.07■□□□□ 0.48
Col7a1Q63870 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col7a1Q63870 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col7a1Q63870 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.07■□□□□ 0.48
Col7a1Q63870 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col7a1Q63870 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col7a1Q63870 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col7a1Q63870 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col7a1Q63870 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.07■□□□□ 0.48
Col7a1Q63870 Gm12933-201ENSMUST00000120203 872 ntBASIC18.06■□□□□ 0.48
Col7a1Q63870 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col7a1Q63870 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col7a1Q63870 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col7a1Q63870 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col7a1Q63870 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col7a1Q63870 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col7a1Q63870 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Col7a1Q63870 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col7a1Q63870 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
Col7a1Q63870 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col7a1Q63870 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col7a1Q63870 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.04■□□□□ 0.48
Col7a1Q63870 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col7a1Q63870 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col7a1Q63870 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col7a1Q63870 Amer2-203ENSMUST00000225247 2662 ntBASIC18.04■□□□□ 0.48
Col7a1Q63870 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC18.04■□□□□ 0.48
Col7a1Q63870 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col7a1Q63870 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Col7a1Q63870 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col7a1Q63870 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col7a1Q63870 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col7a1Q63870 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC18.03■□□□□ 0.48
Col7a1Q63870 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col7a1Q63870 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col7a1Q63870 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col7a1Q63870 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col7a1Q63870 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col7a1Q63870 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.02■□□□□ 0.48
Col7a1Q63870 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.02■□□□□ 0.48
Col7a1Q63870 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC18.02■□□□□ 0.48
Col7a1Q63870 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms