Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col11a1Q61245 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Col11a1Q61245 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Col11a1Q61245 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col11a1Q61245 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC24.3■■□□□ 1.48
Col11a1Q61245 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col11a1Q61245 Gm5874-201ENSMUST00000096101 508 ntBASIC24.29■■□□□ 1.48
Col11a1Q61245 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col11a1Q61245 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col11a1Q61245 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Col11a1Q61245 Krt8-ps-201ENSMUST00000208495 945 ntBASIC24.28■■□□□ 1.48
Col11a1Q61245 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col11a1Q61245 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col11a1Q61245 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Col11a1Q61245 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC24.27■■□□□ 1.48
Col11a1Q61245 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC24.27■■□□□ 1.48
Col11a1Q61245 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Col11a1Q61245 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col11a1Q61245 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC24.27■■□□□ 1.48
Col11a1Q61245 Gm10657-201ENSMUST00000193528 1031 ntBASIC24.27■■□□□ 1.48
Col11a1Q61245 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC24.27■■□□□ 1.48
Col11a1Q61245 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC24.27■■□□□ 1.48
Col11a1Q61245 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col11a1Q61245 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC24.26■■□□□ 1.47
Col11a1Q61245 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Col11a1Q61245 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col11a1Q61245 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col11a1Q61245 Gm8770-201ENSMUST00000121113 1109 ntBASIC24.26■■□□□ 1.47
Col11a1Q61245 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col11a1Q61245 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col11a1Q61245 Gm9870-201ENSMUST00000063874 645 ntBASIC24.26■■□□□ 1.47
Col11a1Q61245 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col11a1Q61245 AC158990.1-201ENSMUST00000221450 2016 ntBASIC24.25■■□□□ 1.47
Col11a1Q61245 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col11a1Q61245 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC24.25■■□□□ 1.47
Col11a1Q61245 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Col11a1Q61245 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col11a1Q61245 Wdr70-203ENSMUST00000227371 1130 ntBASIC24.24■■□□□ 1.47
Col11a1Q61245 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col11a1Q61245 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col11a1Q61245 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col11a1Q61245 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col11a1Q61245 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col11a1Q61245 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Col11a1Q61245 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC24.24■■□□□ 1.47
Col11a1Q61245 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col11a1Q61245 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Col11a1Q61245 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col11a1Q61245 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
Col11a1Q61245 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col11a1Q61245 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC24.22■■□□□ 1.47
Col11a1Q61245 Gm7291-201ENSMUST00000199147 382 ntBASIC24.22■■□□□ 1.47
Col11a1Q61245 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col11a1Q61245 Spcs1-207ENSMUST00000228767 1008 ntBASIC24.22■■□□□ 1.47
Col11a1Q61245 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col11a1Q61245 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Col11a1Q61245 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
Col11a1Q61245 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC24.21■■□□□ 1.47
Col11a1Q61245 Gm6934-201ENSMUST00000194780 1905 ntBASIC24.21■■□□□ 1.47
Col11a1Q61245 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Col11a1Q61245 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC24.21■■□□□ 1.47
Col11a1Q61245 Gm8493-201ENSMUST00000196881 489 ntBASIC24.21■■□□□ 1.47
Col11a1Q61245 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Col11a1Q61245 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
Col11a1Q61245 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Col11a1Q61245 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC24.2■■□□□ 1.46
Col11a1Q61245 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC24.2■■□□□ 1.46
Col11a1Q61245 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col11a1Q61245 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
Col11a1Q61245 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC24.19■■□□□ 1.46
Col11a1Q61245 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col11a1Q61245 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
Col11a1Q61245 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col11a1Q61245 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC24.19■■□□□ 1.46
Col11a1Q61245 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col11a1Q61245 Gm5576-201ENSMUST00000075809 1236 ntBASIC24.19■■□□□ 1.46
Col11a1Q61245 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Col11a1Q61245 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
Col11a1Q61245 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col11a1Q61245 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC24.18■■□□□ 1.46
Col11a1Q61245 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col11a1Q61245 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Col11a1Q61245 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC24.18■■□□□ 1.46
Col11a1Q61245 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Col11a1Q61245 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col11a1Q61245 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col11a1Q61245 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col11a1Q61245 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Col11a1Q61245 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Col11a1Q61245 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC24.17■■□□□ 1.46
Col11a1Q61245 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Col11a1Q61245 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col11a1Q61245 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC24.16■■□□□ 1.46
Col11a1Q61245 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms