Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Shmt1P50431 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC22.37■■□□□ 1.17
Shmt1P50431 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Shmt1P50431 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC22.36■■□□□ 1.17
Shmt1P50431 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC22.36■■□□□ 1.17
Shmt1P50431 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC22.36■■□□□ 1.17
Shmt1P50431 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Shmt1P50431 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC22.36■■□□□ 1.17
Shmt1P50431 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
Shmt1P50431 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC22.35■■□□□ 1.17
Shmt1P50431 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC22.35■■□□□ 1.17
Shmt1P50431 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Shmt1P50431 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Shmt1P50431 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Shmt1P50431 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC22.34■■□□□ 1.17
Shmt1P50431 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Shmt1P50431 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Shmt1P50431 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Shmt1P50431 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Shmt1P50431 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Shmt1P50431 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Shmt1P50431 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Shmt1P50431 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
Shmt1P50431 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
Shmt1P50431 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Shmt1P50431 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.16
Shmt1P50431 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Shmt1P50431 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
Shmt1P50431 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Shmt1P50431 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Shmt1P50431 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Shmt1P50431 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC22.32■■□□□ 1.16
Shmt1P50431 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Shmt1P50431 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Shmt1P50431 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Shmt1P50431 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Shmt1P50431 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Shmt1P50431 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Shmt1P50431 Gm7417-201ENSMUST00000192950 473 ntBASIC22.31■■□□□ 1.16
Shmt1P50431 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC22.31■■□□□ 1.16
Shmt1P50431 AC116713.1-201ENSMUST00000215074 430 ntBASIC22.31■■□□□ 1.16
Shmt1P50431 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Shmt1P50431 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Shmt1P50431 Gm42418-201ENSMUST00000182010 1831 ntBASIC22.31■■□□□ 1.16
Shmt1P50431 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Shmt1P50431 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Shmt1P50431 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC22.31■■□□□ 1.16
Shmt1P50431 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC22.3■■□□□ 1.16
Shmt1P50431 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Gm26766-202ENSMUST00000227544 2347 ntBASIC22.3■■□□□ 1.16
Shmt1P50431 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Shmt1P50431 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Shmt1P50431 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Shmt1P50431 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Shmt1P50431 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Shmt1P50431 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Shmt1P50431 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Shmt1P50431 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Shmt1P50431 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Shmt1P50431 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC22.28■■□□□ 1.16
Shmt1P50431 Gm17641-201ENSMUST00000166328 2350 ntBASIC22.28■■□□□ 1.16
Shmt1P50431 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Shmt1P50431 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Shmt1P50431 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.27■■□□□ 1.16
Shmt1P50431 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Shmt1P50431 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Shmt1P50431 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Shmt1P50431 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Shmt1P50431 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Shmt1P50431 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC22.26■■□□□ 1.15
Shmt1P50431 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Shmt1P50431 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Shmt1P50431 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Gm37415-201ENSMUST00000192265 2054 ntBASIC22.25■■□□□ 1.15
Shmt1P50431 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Shmt1P50431 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Shmt1P50431 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Shmt1P50431 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Shmt1P50431 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.24■■□□□ 1.15
Shmt1P50431 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC22.24■■□□□ 1.15
Shmt1P50431 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC22.24■■□□□ 1.15
Shmt1P50431 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Shmt1P50431 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms