Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col6a3E9PWQ3 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col6a3E9PWQ3 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col6a3E9PWQ3 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.85■■□□□ 1.09
Col6a3E9PWQ3 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col6a3E9PWQ3 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.84■■□□□ 1.09
Col6a3E9PWQ3 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col6a3E9PWQ3 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.84■■□□□ 1.09
Col6a3E9PWQ3 Gm18671-201ENSMUST00000214826 683 ntBASIC21.84■■□□□ 1.09
Col6a3E9PWQ3 Nsd1-206ENSMUST00000224918 1001 ntBASIC21.84■■□□□ 1.09
Col6a3E9PWQ3 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col6a3E9PWQ3 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col6a3E9PWQ3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col6a3E9PWQ3 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col6a3E9PWQ3 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col6a3E9PWQ3 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col6a3E9PWQ3 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col6a3E9PWQ3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col6a3E9PWQ3 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col6a3E9PWQ3 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col6a3E9PWQ3 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.78■■□□□ 1.08
Col6a3E9PWQ3 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col6a3E9PWQ3 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.78■■□□□ 1.08
Col6a3E9PWQ3 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC21.78■■□□□ 1.08
Col6a3E9PWQ3 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.77■■□□□ 1.08
Col6a3E9PWQ3 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col6a3E9PWQ3 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col6a3E9PWQ3 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col6a3E9PWQ3 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col6a3E9PWQ3 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col6a3E9PWQ3 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col6a3E9PWQ3 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Col6a3E9PWQ3 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col6a3E9PWQ3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.74■■□□□ 1.07
Col6a3E9PWQ3 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col6a3E9PWQ3 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col6a3E9PWQ3 Gm12527-201ENSMUST00000117967 564 ntBASIC21.74■■□□□ 1.07
Col6a3E9PWQ3 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col6a3E9PWQ3 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC21.74■■□□□ 1.07
Col6a3E9PWQ3 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col6a3E9PWQ3 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Col6a3E9PWQ3 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 AC153524.1-201ENSMUST00000220436 1935 ntBASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 Gm29994-201ENSMUST00000195495 1193 ntBASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms