Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Riok3-201ENSMUST00000025270 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Trem1Q9JKE2 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 AC160340.2-201ENSMUST00000220812 3675 ntBASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Gm43073-201ENSMUST00000198200 1189 ntBASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Bloc1s5-203ENSMUST00000224902 612 ntBASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Gm6018-201ENSMUST00000216090 1306 ntBASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC11.34□□□□□ -0.59
Trem1Q9JKE2 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm45089-201ENSMUST00000208082 2040 ntBASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 AC107453.4-201ENSMUST00000227068 1817 ntBASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Glt1d1-201ENSMUST00000118139 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm13015-201ENSMUST00000118674 204 ntBASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm18737-201ENSMUST00000173594 937 ntBASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC11.33□□□□□ -0.6
Trem1Q9JKE2 AC130671.1-201ENSMUST00000227384 1237 ntBASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Trem1Q9JKE2 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms