Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Gm9755-201ENSMUST00000032981 1356 ntBASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Lima1Q9ERG0 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.54□□□□□ -0.4
Lima1Q9ERG0 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm6983-201ENSMUST00000214912 628 ntBASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Lima1Q9ERG0 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Gm44397-201ENSMUST00000195950 113 ntBASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Lima1Q9ERG0 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lima1Q9ERG0 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lima1Q9ERG0 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lima1Q9ERG0 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.52□□□□□ -0.4
Lima1Q9ERG0 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lima1Q9ERG0 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lima1Q9ERG0 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lima1Q9ERG0 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms