Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Ubfd1Q78JW9 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm23270-201ENSMUST00000104055 131 ntBASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm15236-201ENSMUST00000117309 379 ntBASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm11930-201ENSMUST00000117788 190 ntBASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm15808-201ENSMUST00000119046 604 ntBASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Ubfd1Q78JW9 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm5638-201ENSMUST00000118618 1258 ntBASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm15703-201ENSMUST00000120250 880 ntBASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.37□□□□□ -0.43
Ubfd1Q78JW9 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms