Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx1P48377 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx1P48377 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx1P48377 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx1P48377 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
Rfx1P48377 Map1b-203ENSMUST00000223725 2669 ntBASIC15.16■□□□□ 0.02
Rfx1P48377 Syt7-204ENSMUST00000223586 1344 ntBASIC15.16■□□□□ 0.02
Rfx1P48377 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.15■□□□□ 0.02
Rfx1P48377 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Gm44806-201ENSMUST00000205574 2303 ntBASIC15.15■□□□□ 0.02
Rfx1P48377 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Gm2238-201ENSMUST00000192074 3669 ntBASIC15.15■□□□□ 0.02
Rfx1P48377 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Gm16202-201ENSMUST00000117532 544 ntBASIC15.15■□□□□ 0.02
Rfx1P48377 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC15.15■□□□□ 0.02
Rfx1P48377 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Rfx1P48377 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Mir8102-201ENSMUST00000184148 139 ntBASIC15.15■□□□□ 0.02
Rfx1P48377 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Gm43858-201ENSMUST00000199418 1778 ntBASIC15.15■□□□□ 0.02
Rfx1P48377 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Rfx1P48377 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.15■□□□□ 0.02
Rfx1P48377 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx1P48377 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.14■□□□□ 0.01
Rfx1P48377 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC15.14■□□□□ 0.01
Rfx1P48377 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Rfx1P48377 Mir7684-201ENSMUST00000183858 60 ntBASIC15.14■□□□□ 0.01
Rfx1P48377 Gm44069-201ENSMUST00000204898 506 ntBASIC15.14■□□□□ 0.01
Rfx1P48377 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC15.14■□□□□ 0.01
Rfx1P48377 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Rfx1P48377 Gm10728-201ENSMUST00000194292 1829 ntBASIC15.14■□□□□ 0.01
Rfx1P48377 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Rfx1P48377 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Rfx1P48377 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx1P48377 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Gm42929-201ENSMUST00000198374 1286 ntBASIC15.13■□□□□ 0.01
Rfx1P48377 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC15.13■□□□□ 0.01
Rfx1P48377 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Itm2b-204ENSMUST00000228637 783 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms