Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm12029-201ENSMUST00000120073 832 ntBASIC15.3■□□□□ 0.04
Col4a1P02463 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC15.3■□□□□ 0.04
Col4a1P02463 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Col4a1P02463 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Col4a1P02463 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Col4a1P02463 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Col4a1P02463 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC15.3■□□□□ 0.04
Col4a1P02463 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Gm9279-201ENSMUST00000223175 1606 ntBASIC15.3■□□□□ 0.04
Col4a1P02463 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC15.29■□□□□ 0.04
Col4a1P02463 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Col4a1P02463 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC15.29■□□□□ 0.04
Col4a1P02463 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC15.29■□□□□ 0.04
Col4a1P02463 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 AC151275.1-201ENSMUST00000224870 585 ntBASIC15.29■□□□□ 0.04
Col4a1P02463 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC15.29■□□□□ 0.04
Col4a1P02463 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Col4a1P02463 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC15.29■□□□□ 0.04
Col4a1P02463 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 AC158355.1-201ENSMUST00000215895 1705 ntBASIC15.29■□□□□ 0.04
Col4a1P02463 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col4a1P02463 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 AC140293.1-201ENSMUST00000225626 1247 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm12899-201ENSMUST00000120565 551 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm22144-201ENSMUST00000157402 102 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC15.28■□□□□ 0.04
Col4a1P02463 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm8343-201ENSMUST00000182705 994 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Gm28686-201ENSMUST00000187404 609 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Gm10774-201ENSMUST00000188689 204 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm37513-201ENSMUST00000194830 2268 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Gm38378-201ENSMUST00000195153 2268 ntBASIC15.28■□□□□ 0.04
Col4a1P02463 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.28■□□□□ 0.04
Col4a1P02463 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col4a1P02463 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms