Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Pcdh1F7BJK1 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Pcdh1F7BJK1 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Pcdh1F7BJK1 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC11.45□□□□□ -0.58
Pcdh1F7BJK1 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC11.45□□□□□ -0.58
Pcdh1F7BJK1 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Ldha-ps-201ENSMUST00000119390 995 ntBASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm42929-201ENSMUST00000198374 1286 ntBASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm6458-201ENSMUST00000211573 635 ntBASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm6983-201ENSMUST00000214912 628 ntBASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 AC125206.2-201ENSMUST00000217454 574 ntBASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Pcdh1F7BJK1 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm19891-201ENSMUST00000189771 303 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm42612-201ENSMUST00000197986 623 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm43170-201ENSMUST00000199827 612 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 AC156560.2-201ENSMUST00000221232 264 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 AC122860.2-201ENSMUST00000217967 2671 ntBASIC11.43□□□□□ -0.58
Pcdh1F7BJK1 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Pcdh1F7BJK1 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms