Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Gm11793-201ENSMUST00000120433 981 ntBASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Gm5850-201ENSMUST00000192923 1206 ntBASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Gm43118-201ENSMUST00000199149 775 ntBASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Gm5781-201ENSMUST00000219792 443 ntBASIC13.06□□□□□ -0.32
Vps28Q9D1C8 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Vps28Q9D1C8 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gm12502-201ENSMUST00000120197 444 ntBASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gm12291-201ENSMUST00000121627 311 ntBASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gm8738-201ENSMUST00000172606 329 ntBASIC13.05□□□□□ -0.32
Vps28Q9D1C8 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.05□□□□□ -0.32
Vps28Q9D1C8 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Gm20554-201ENSMUST00000177421 2352 ntBASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Vps28Q9D1C8 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms