Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm5745-201ENSMUST00000183748 313 ntBASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Tyms-ps-201ENSMUST00000219550 915 ntBASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gm40377-201ENSMUST00000204604 2015 ntBASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Gm16296-201ENSMUST00000159905 325 ntBASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Gm6266-201ENSMUST00000203844 806 ntBASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Gm40466-201ENSMUST00000212174 422 ntBASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ddx56Q9D0R4 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm8835-201ENSMUST00000173096 1169 ntBASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 AC130829.1-201ENSMUST00000221548 494 ntBASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 AC022775.2-201ENSMUST00000227885 646 ntBASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ddx56Q9D0R4 Gm7553-201ENSMUST00000185805 1426 ntBASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms