Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.42□□□□□ -0.42
Msh4Q99MT2 Gm10339-203ENSMUST00000225409 1671 ntBASIC12.42□□□□□ -0.42
Msh4Q99MT2 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Trav4d-2-201ENSMUST00000120914 335 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm1335-201ENSMUST00000121653 386 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm8565-201ENSMUST00000183259 1014 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm27682-201ENSMUST00000183930 110 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm9728-201ENSMUST00000200197 1055 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Dctn4-202ENSMUST00000223590 1530 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Msh4Q99MT2 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.41□□□□□ -0.42
Msh4Q99MT2 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Msh4Q99MT2 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Gm8062-201ENSMUST00000139696 444 ntBASIC12.4□□□□□ -0.42
Msh4Q99MT2 Gm37424-201ENSMUST00000191727 561 ntBASIC12.4□□□□□ -0.42
Msh4Q99MT2 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC12.4□□□□□ -0.42
Msh4Q99MT2 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Msh4Q99MT2 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Msh4Q99MT2 Gm20554-201ENSMUST00000177421 2352 ntBASIC12.4□□□□□ -0.43
Msh4Q99MT2 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.4□□□□□ -0.43
Msh4Q99MT2 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.4□□□□□ -0.43
Msh4Q99MT2 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Msh4Q99MT2 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.39□□□□□ -0.43
Msh4Q99MT2 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms