Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 AC114008.2-201ENSMUST00000227699 1347 ntBASIC14.24□□□□□ -0.13
Usp49Q6P9L4 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm11425-201ENSMUST00000119608 498 ntBASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm38230-201ENSMUST00000193572 1159 ntBASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm40466-201ENSMUST00000212174 422 ntBASIC14.24□□□□□ -0.13
Usp49Q6P9L4 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm9396-201ENSMUST00000076703 567 ntBASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp49Q6P9L4 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm14760-201ENSMUST00000121831 999 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 AY702102-202ENSMUST00000194651 1173 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm43818-201ENSMUST00000200605 466 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm15897-201ENSMUST00000117770 1486 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp49Q6P9L4 AC159195.1-201ENSMUST00000225867 2086 ntBASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Gm8228-201ENSMUST00000189949 2192 ntBASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Gm8835-201ENSMUST00000173096 1169 ntBASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Usp49Q6P9L4 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.21□□□□□ -0.13
Usp49Q6P9L4 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms