Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trim28Q62318 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim28Q62318 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Trim28Q62318 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim28Q62318 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim28Q62318 Gm23200-201ENSMUST00000104379 132 ntBASIC16.41■□□□□ 0.22
Trim28Q62318 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trim28Q62318 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Mir5120-201ENSMUST00000175020 78 ntBASIC16.41■□□□□ 0.22
Trim28Q62318 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 AC155637.1-201ENSMUST00000218560 636 ntBASIC16.41■□□□□ 0.22
Trim28Q62318 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim28Q62318 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC16.41■□□□□ 0.22
Trim28Q62318 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Gm37644-201ENSMUST00000192190 2270 ntBASIC16.41■□□□□ 0.22
Trim28Q62318 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trim28Q62318 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim28Q62318 AC126262.1-201ENSMUST00000221802 1904 ntBASIC16.41■□□□□ 0.22
Trim28Q62318 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim28Q62318 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trim28Q62318 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Trim28Q62318 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Gm5616-201ENSMUST00000165252 384 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 Gm8741-201ENSMUST00000174736 384 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 Mir5132-201ENSMUST00000175166 71 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 Gm17812-201ENSMUST00000204935 318 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trim28Q62318 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trim28Q62318 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC16.4■□□□□ 0.22
Trim28Q62318 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trim28Q62318 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Gm7002-201ENSMUST00000221386 2165 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 AC123834.1-201ENSMUST00000225346 2043 ntBASIC16.4■□□□□ 0.22
Trim28Q62318 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim28Q62318 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
Trim28Q62318 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Trim28Q62318 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
Trim28Q62318 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim28Q62318 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim28Q62318 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Trim28Q62318 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trim28Q62318 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC16.39■□□□□ 0.21
Trim28Q62318 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim28Q62318 Gm8385-201ENSMUST00000058999 643 ntBASIC16.39■□□□□ 0.21
Trim28Q62318 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC16.39■□□□□ 0.21
Trim28Q62318 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms