Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Gm37105-201ENSMUST00000192251 2085 ntBASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Col28a1Q2UY11 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gm45684-201ENSMUST00000210244 1571 ntBASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Col28a1Q2UY11 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 AC114008.2-201ENSMUST00000227699 1347 ntBASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC12.37□□□□□ -0.43
Col28a1Q2UY11 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Mir1982-201ENSMUST00000157368 74 ntBASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Mir7654-201ENSMUST00000185082 70 ntBASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Gm17795-201ENSMUST00000214505 757 ntBASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col28a1Q2UY11 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms