Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Gm6855-201ENSMUST00000206307 790 ntBASIC12.67□□□□□ -0.38
Col9a1Q05722 Gm45299-202ENSMUST00000211011 765 ntTSL 5 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Speer6-ps1-203ENSMUST00000223482 979 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 AC096628.1-201ENSMUST00000226060 641 ntBASIC12.67□□□□□ -0.38
Col9a1Q05722 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Gm6781-201ENSMUST00000038304 1242 ntBASIC12.67□□□□□ -0.38
Col9a1Q05722 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Olfr183-202ENSMUST00000206303 1862 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Cts3-202ENSMUST00000223815 1367 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Col9a1Q05722 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col9a1Q05722 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm16425-201ENSMUST00000118143 3130 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm44746-201ENSMUST00000205565 1349 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm13809-201ENSMUST00000117921 597 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm4726-201ENSMUST00000135604 736 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm11948-201ENSMUST00000142322 539 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm6019-201ENSMUST00000148369 736 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm11942-201ENSMUST00000180255 345 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm38092-201ENSMUST00000195600 653 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm43491-201ENSMUST00000197133 784 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm5717-201ENSMUST00000198243 1062 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 AC069561.1-201ENSMUST00000213750 424 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 AC122408.1-201ENSMUST00000218949 218 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm3619-201ENSMUST00000219947 775 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.66□□□□□ -0.38
Col9a1Q05722 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Olfr854-201ENSMUST00000072419 948 ntAPPRIS P2 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col9a1Q05722 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC12.66□□□□□ -0.38
Col9a1Q05722 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC12.65□□□□□ -0.38
Col9a1Q05722 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Col9a1Q05722 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col9a1Q05722 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms