Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col6a1Q04857 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col6a1Q04857 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col6a1Q04857 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC14.07□□□□□ -0.16
Col6a1Q04857 Gm23699-201ENSMUST00000158835 135 ntBASIC14.07□□□□□ -0.16
Col6a1Q04857 Gm8913-201ENSMUST00000209491 641 ntBASIC14.07□□□□□ -0.16
Col6a1Q04857 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC14.07□□□□□ -0.16
Col6a1Q04857 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col6a1Q04857 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Col6a1Q04857 AC101945.2-201ENSMUST00000227886 1377 ntBASIC14.07□□□□□ -0.16
Col6a1Q04857 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col6a1Q04857 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Col6a1Q04857 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.06□□□□□ -0.16
Col6a1Q04857 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.06□□□□□ -0.16
Col6a1Q04857 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Gm5070-201ENSMUST00000177599 862 ntBASIC14.06□□□□□ -0.16
Col6a1Q04857 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Spcs1-203ENSMUST00000226374 592 ntBASIC14.06□□□□□ -0.16
Col6a1Q04857 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col6a1Q04857 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.06□□□□□ -0.16
Col6a1Q04857 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC14.06□□□□□ -0.16
Col6a1Q04857 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm38157-201ENSMUST00000194178 1698 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Selenot-ps-201ENSMUST00000119098 593 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm12286-201ENSMUST00000119246 1002 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm17040-202ENSMUST00000170597 889 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm7003-201ENSMUST00000195089 312 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm44126-201ENSMUST00000204831 514 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm5904-201ENSMUST00000210286 865 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm6458-201ENSMUST00000211573 635 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC14.05□□□□□ -0.16
Col6a1Q04857 AC113031.8-201ENSMUST00000227856 631 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.05□□□□□ -0.16
Col6a1Q04857 AC154725.1-201ENSMUST00000224826 1961 ntBASIC14.05□□□□□ -0.16
Col6a1Q04857 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col6a1Q04857 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Col6a1Q04857 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms