Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 AC238940.1-201ENSMUST00000225106 1858 ntBASIC11.01□□□□□ -0.65
Nkx3-1P97436 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Nkx3-1P97436 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Nkx3-1P97436 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC11□□□□□ -0.65
Nkx3-1P97436 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Nkx3-1P97436 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Gm14028-201ENSMUST00000117434 479 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Gm13665-201ENSMUST00000120830 528 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Gm12291-201ENSMUST00000121627 311 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Gm8908-201ENSMUST00000121633 1024 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Gm25043-201ENSMUST00000158604 212 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Nkx3-1P97436 Gm6652-201ENSMUST00000186414 1070 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11□□□□□ -0.65
Nkx3-1P97436 Gm9445-201ENSMUST00000207454 1285 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11□□□□□ -0.65
Nkx3-1P97436 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC11□□□□□ -0.65
Nkx3-1P97436 Nsd1-205ENSMUST00000224693 852 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11□□□□□ -0.65
Nkx3-1P97436 AC113031.8-201ENSMUST00000227856 631 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11□□□□□ -0.65
Nkx3-1P97436 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Gm9333-201ENSMUST00000205452 1323 ntBASIC11□□□□□ -0.65
Nkx3-1P97436 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC11□□□□□ -0.65
Nkx3-1P97436 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Nkx3-1P97436 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Gm26361-201ENSMUST00000158868 186 ntBASIC10.99□□□□□ -0.65
Nkx3-1P97436 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Nkx3-1P97436 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms