Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Traf1P39428 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Traf1P39428 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.74□□□□□ -0.05
Traf1P39428 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC14.74□□□□□ -0.05
Traf1P39428 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC14.74□□□□□ -0.05
Traf1P39428 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
Traf1P39428 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC14.74□□□□□ -0.05
Traf1P39428 Gm19963-201ENSMUST00000208413 1255 ntBASIC14.74□□□□□ -0.05
Traf1P39428 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Gm9004-201ENSMUST00000218739 1222 ntBASIC14.74□□□□□ -0.05
Traf1P39428 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Traf1P39428 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC14.74□□□□□ -0.05
Traf1P39428 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Gm27194-201ENSMUST00000175753 2936 ntBASIC14.74□□□□□ -0.05
Traf1P39428 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC14.74□□□□□ -0.05
Traf1P39428 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Traf1P39428 Gm5989-201ENSMUST00000096092 2077 ntBASIC14.73□□□□□ -0.05
Traf1P39428 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Traf1P39428 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Traf1P39428 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC14.73□□□□□ -0.05
Traf1P39428 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
Traf1P39428 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC14.73□□□□□ -0.05
Traf1P39428 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Traf1P39428 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Daam2-202ENSMUST00000224595 1926 ntBASIC14.73□□□□□ -0.05
Traf1P39428 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.73□□□□□ -0.05
Traf1P39428 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Traf1P39428 Gm30285-201ENSMUST00000214614 422 ntBASIC14.73□□□□□ -0.05
Traf1P39428 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Traf1P39428 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Traf1P39428 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Traf1P39428 Gm6015-201ENSMUST00000217493 1586 ntBASIC14.73□□□□□ -0.05
Traf1P39428 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Gm4366-201ENSMUST00000201488 1342 ntBASIC14.72□□□□□ -0.05
Traf1P39428 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC14.72□□□□□ -0.05
Traf1P39428 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC14.72□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms