Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Cdx1P18111 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Cdx1P18111 Gm9115-201ENSMUST00000120192 1348 ntBASIC10.33□□□□□ -0.76
Cdx1P18111 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC10.32□□□□□ -0.76
Cdx1P18111 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC10.32□□□□□ -0.76
Cdx1P18111 Ldb3-207ENSMUST00000227819 1499 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.32□□□□□ -0.76
Cdx1P18111 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm23984-201ENSMUST00000157139 203 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC10.32□□□□□ -0.76
Cdx1P18111 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm6473-201ENSMUST00000188572 1210 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm45384-201ENSMUST00000210451 277 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm45668-201ENSMUST00000211271 493 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Mir125a-201ENSMUST00000083545 68 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC10.32□□□□□ -0.76
Cdx1P18111 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm37600-201ENSMUST00000193764 3292 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC10.32□□□□□ -0.76
Cdx1P18111 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC10.32□□□□□ -0.76
Cdx1P18111 Gm15163-201ENSMUST00000120749 1302 ntBASIC10.32□□□□□ -0.76
Cdx1P18111 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Cdx1P18111 AC122811.1-201ENSMUST00000222257 2921 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Gm15459-201ENSMUST00000117405 1941 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 Gm8355-201ENSMUST00000177767 1941 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Cdx1P18111 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC10.31□□□□□ -0.76
Cdx1P18111 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Cdx1P18111 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Gm12585-201ENSMUST00000117307 290 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC10.31□□□□□ -0.76
Cdx1P18111 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC10.31□□□□□ -0.76
Cdx1P18111 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
Cdx1P18111 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Gm37748-201ENSMUST00000194379 1140 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 Gm37917-201ENSMUST00000194711 392 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 AC165157.4-201ENSMUST00000220587 139 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 AC154687.2-201ENSMUST00000223853 640 ntBASIC10.31□□□□□ -0.76
Cdx1P18111 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Cdx1P18111 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Cdx1P18111 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC10.31□□□□□ -0.76
Cdx1P18111 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC10.31□□□□□ -0.76
Cdx1P18111 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Cdx1P18111 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC10.3□□□□□ -0.76
Cdx1P18111 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
Cdx1P18111 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms