Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Olfr1275-201ENSMUST00000099620 1020 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Hoxd3P09027 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Gm37644-201ENSMUST00000192190 2270 ntBASIC10.05□□□□□ -0.8
Hoxd3P09027 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC10.05□□□□□ -0.8
Hoxd3P09027 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Hoxd3P09027 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC10.05□□□□□ -0.8
Hoxd3P09027 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Gm43579-201ENSMUST00000202387 1307 ntBASIC10.05□□□□□ -0.8
Hoxd3P09027 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Hoxd3P09027 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hoxd3P09027 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm13615-201ENSMUST00000120242 1612 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm11652-201ENSMUST00000117842 1267 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm12363-201ENSMUST00000122250 668 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC10.04□□□□□ -0.8
Hoxd3P09027 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm17208-201ENSMUST00000168388 535 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Mir6420-201ENSMUST00000185032 102 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gm43133-201ENSMUST00000197472 463 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Olfr907-202ENSMUST00000214003 1235 ntAPPRIS P1 TSL 3 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC10.04□□□□□ -0.8
Hoxd3P09027 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC10.04□□□□□ -0.8
Hoxd3P09027 AC154595.3-201ENSMUST00000224579 384 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 AC154462.2-201ENSMUST00000227519 370 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Olfr907-201ENSMUST00000052901 933 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Hoxd3P09027 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Hoxd3P09027 n-R5s195-201ENSMUST00000082891 119 ntBASIC10.04□□□□□ -0.8
Hoxd3P09027 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Hoxd3P09027 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hoxd3P09027 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Hoxd3P09027 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hoxd3P09027 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hoxd3P09027 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Hoxd3P09027 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hoxd3P09027 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Hoxd3P09027 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Hoxd3P09027 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC10.03□□□□□ -0.8
Hoxd3P09027 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms