Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm12579-201ENSMUST00000118040 783 ntBASIC15.33■□□□□ 0.04
Col4a1P02463 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC15.33■□□□□ 0.04
Col4a1P02463 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC15.33■□□□□ 0.04
Col4a1P02463 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC15.33■□□□□ 0.04
Col4a1P02463 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Gm44260-201ENSMUST00000204946 2094 ntBASIC15.33■□□□□ 0.04
Col4a1P02463 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC15.33■□□□□ 0.04
Col4a1P02463 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Gm37861-201ENSMUST00000193534 2869 ntBASIC15.33■□□□□ 0.04
Col4a1P02463 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col4a1P02463 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Col4a1P02463 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm18227-201ENSMUST00000211082 1468 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm26286-201ENSMUST00000104166 134 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Gm15131-201ENSMUST00000119124 595 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Gm5419-201ENSMUST00000119301 527 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Rprl1-201ENSMUST00000158050 327 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm9797-202ENSMUST00000218003 294 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Col4a1P02463 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col4a1P02463 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm14247-201ENSMUST00000120950 237 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col4a1P02463 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC15.32■□□□□ 0.04
Col4a1P02463 Mir8115-201ENSMUST00000184992 119 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Gm19287-201ENSMUST00000203190 358 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Gm4157-201ENSMUST00000211647 679 ntBASIC15.32■□□□□ 0.04
Col4a1P02463 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col4a1P02463 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col4a1P02463 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col4a1P02463 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col4a1P02463 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Gm38228-201ENSMUST00000193169 1293 ntBASIC15.31■□□□□ 0.04
Col4a1P02463 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC15.31■□□□□ 0.04
Col4a1P02463 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Col4a1P02463 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col4a1P02463 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Col4a1P02463 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Gm45266-201ENSMUST00000210111 2173 ntBASIC15.3■□□□□ 0.04
Col4a1P02463 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col4a1P02463 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms