Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 AC151895.1-201ENSMUST00000219025 1742 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Gm14350-201ENSMUST00000116642 640 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Mir1982-201ENSMUST00000157368 74 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim3Q9R1R2 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm13226-201ENSMUST00000117838 404 ntBASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm27331-201ENSMUST00000183705 60 ntBASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm16372-201ENSMUST00000073088 450 ntBASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Trim3Q9R1R2 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms