Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Gm13369-201ENSMUST00000119442 987 ntBASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Ighv8-10-201ENSMUST00000199579 358 ntBASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 AC093022.5-201ENSMUST00000226841 1079 ntBASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Prpf40aQ9R1C7 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gm17435-202ENSMUST00000212699 1998 ntBASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gm8805-201ENSMUST00000117848 313 ntBASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gm13829-201ENSMUST00000119600 138 ntBASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Prpf40aQ9R1C7 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Gm43818-201ENSMUST00000200605 466 ntBASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Gm6266-201ENSMUST00000203844 806 ntBASIC14.04□□□□□ -0.16
Prpf40aQ9R1C7 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms