Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm37748-201ENSMUST00000194379 1140 ntBASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Gm10268-201ENSMUST00000085340 555 ntBASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ddx56Q9D0R4 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Gm1335-201ENSMUST00000121653 386 ntBASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Gm27682-201ENSMUST00000183930 110 ntBASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ddx56Q9D0R4 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Gm43858-201ENSMUST00000199418 1778 ntBASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Gm9299-201ENSMUST00000206392 1140 ntBASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 AC122459.1-201ENSMUST00000228373 885 ntBASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Gm10339-203ENSMUST00000225409 1671 ntBASIC13.4□□□□□ -0.26
Ddx56Q9D0R4 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Ddx56Q9D0R4 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
Ddx56Q9D0R4 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Ddx56Q9D0R4 AC114008.2-201ENSMUST00000227699 1347 ntBASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Ddx56Q9D0R4 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC13.39□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms