Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm37922-201ENSMUST00000195596 455 ntBASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ushbp1Q8R370 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.31□□□□□ -0.12
Ushbp1Q8R370 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm12241-201ENSMUST00000118330 726 ntBASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm25927-201ENSMUST00000175058 117 ntBASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Gm10608-202ENSMUST00000213924 676 ntBASIC14.3□□□□□ -0.12
Ushbp1Q8R370 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ushbp1Q8R370 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 AC166051.1-201ENSMUST00000214313 210 ntBASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Gm9176-201ENSMUST00000219955 1120 ntBASIC14.29□□□□□ -0.12
Ushbp1Q8R370 AC132317.1-201ENSMUST00000227227 962 ntBASIC14.29□□□□□ -0.12
Ushbp1Q8R370 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Gm8706-201ENSMUST00000197372 1491 ntBASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC14.29□□□□□ -0.12
Ushbp1Q8R370 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm8617-201ENSMUST00000118796 2222 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm29396-201ENSMUST00000185659 716 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm37497-201ENSMUST00000195830 798 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm18916-201ENSMUST00000198264 1246 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.28□□□□□ -0.12
Ushbp1Q8R370 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms