Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm37922-201ENSMUST00000195596 455 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm43133-201ENSMUST00000197472 463 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm18056-201ENSMUST00000207670 568 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm18061-201ENSMUST00000208350 562 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm18063-201ENSMUST00000208529 568 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm18052-201ENSMUST00000208750 559 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 CT485787.1-201ENSMUST00000225617 968 ntBASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
Vps53Q8CCB4 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Gm9368-201ENSMUST00000219348 831 ntBASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Vps53Q8CCB4 Gm9025-201ENSMUST00000122415 1575 ntBASIC14.85□□□□□ -0.03
Vps53Q8CCB4 AC113060.1-201ENSMUST00000225689 1573 ntBASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Gm11793-201ENSMUST00000120433 981 ntBASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Gm43758-201ENSMUST00000199500 367 ntBASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Gm16372-201ENSMUST00000073088 450 ntBASIC14.85□□□□□ -0.03
Vps53Q8CCB4 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms