Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Gm2606-201ENSMUST00000100754 1002 ntBASIC17.91■□□□□ 0.46
Usp47Q8BY87 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Gm27046-201ENSMUST00000182160 463 ntBASIC17.91■□□□□ 0.46
Usp47Q8BY87 Gm7293-201ENSMUST00000216682 1007 ntBASIC17.91■□□□□ 0.46
Usp47Q8BY87 AC154222.2-201ENSMUST00000225848 607 ntBASIC17.91■□□□□ 0.46
Usp47Q8BY87 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp47Q8BY87 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 AC154262.2-202ENSMUST00000225158 1331 ntBASIC17.9■□□□□ 0.46
Usp47Q8BY87 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Gm4760-201ENSMUST00000119663 1030 ntBASIC17.9■□□□□ 0.46
Usp47Q8BY87 Gm18827-201ENSMUST00000188341 790 ntBASIC17.9■□□□□ 0.46
Usp47Q8BY87 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usp47Q8BY87 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.46
Usp47Q8BY87 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Usp47Q8BY87 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Mir877-201ENSMUST00000104738 85 ntBASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gm9083-201ENSMUST00000120423 819 ntBASIC17.89■□□□□ 0.45
Usp47Q8BY87 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gm13097-201ENSMUST00000210722 397 ntBASIC17.89■□□□□ 0.45
Usp47Q8BY87 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usp47Q8BY87 Gm44942-201ENSMUST00000096093 2072 ntBASIC17.89■□□□□ 0.45
Usp47Q8BY87 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm18056-201ENSMUST00000207670 568 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm18061-201ENSMUST00000208350 562 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm18063-201ENSMUST00000208529 568 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm18052-201ENSMUST00000208750 559 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm19994-201ENSMUST00000217086 586 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 AC126253.1-202ENSMUST00000226732 835 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usp47Q8BY87 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Usp47Q8BY87 Gm45342-201ENSMUST00000210903 1363 ntBASIC17.88■□□□□ 0.45
Usp47Q8BY87 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usp47Q8BY87 AC123834.1-201ENSMUST00000225346 2043 ntBASIC17.87■□□□□ 0.45
Usp47Q8BY87 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms